The Nittany Lions found it difficult to find their footing in the second half despite their strong start.
Paxton Kling led the way for Penn State's bats with five hits.
Six Nittany Lions had at least three points in the victory.
Clary seeks damages for defamation, racial discrimination, unjust enrichment, and unreasonable restraint of trade.
Penn State couldn't catch up to an early Hoya lead.
The contract is worth $30.75 million with $21.25 million guaranteed.